If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ), 'gf_id' => 'HOM05D000889', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000889' ), 'data_identifier' => 'HOM05D000889', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000889', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '674', 'num_species' => '87' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36060' => 'bna', 'A01p36200' => 'bna', 'A02p13760' => 'bna', 'A02p18890' => 'bna', 'A02p22310' => 'bna', 'A02p36340' => 'bna', 'A02p36360' => 'bna', 'A02p36390' => 'bna', 'A02p36400' => 'bna', 'A03p40600' => 'bna', 'A04p11180' => 'bna', 'A05p20910' => 'bna', 'A06p04870' => 'bna', 'A06p04890' => 'bna', 'A06p40110' => 'bna', 'A06p40120' => 'bna', 'A07p33650' => 'bna', 'A07p39630' => 'bna', 'A08p04470' => 'bna', 'A08p35480' => 'bna', 'A08p35490' => 'bna', 'A09p16990' => 'bna', 'A09p17010' => 'bna', 'Aa31LG10G4770' => 'aar', 'Aa31LG2G3320' => 'aar', 'Aa31LG4G4110' => 'aar', 'Aa31LG8G5130' => 'aar', 'Aa31LG9G17200' => 'aar', 'Aa31LG9G17210' => 'aar', 'Aa31LG9G17220' => 'aar', 'Actinidia18921' => 'ach', 'Ah.10g033590' => 'amhyb', 'Ah.10g037640' => 'amhyb', 'Ah.10g037650' => 'amhyb', 'Ah.16g101550' => 'amhyb', 'Ah.16g101560' => 'amhyb', 'AL1G17980' => 'aly', 'AL1G17990' => 'aly', 'AL1G18000' => 'aly', 'AL1G18020' => 'aly', 'AL1G55470' => 'aly', 'AL2G23750' => 'aly', 'AL2G25060' => 'aly', 'AL2G33590' => 'aly', 'AL3G31510' => 'aly', 'AL5G19020' => 'aly', 'AL5G38850' => 'aly', 'AL7G52700' => 'aly', 'AL9U11690' => 'aly', 'Aqoxy3G00205' => 'aox', 'Aqoxy3G00206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.80U1VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KYY6V' => 'arhy', 'AT1G07747' => 'ath', 'AT1G43665' => 'ath', 'AT1G43666' => 'ath', 'AT1G43667' => 'ath', 'AT1G48750' => 'ath', 'AT1G66850' => 'ath', 'AT1G73780' => 'ath', 'AT2G14846' => 'ath', 'AT3G18280' => 'ath', 'AT3G57310' => 'ath', 'AT4G12825' => 'ath', 'AT5G38160' => 'ath', 'AT5G38170' => 'ath', 'AT5G38180' => 'ath', 'AT5G38195' => 'ath', 'AT5G38197' => 'ath', 'ATR0626G371' => 'atr', 'ATR0807G176' => 'atr', 'ATR0807G186' => 'atr', 'ATR0807G199' => 'atr', 'Atru.chr1.1619' => 'acertr', 'Atru.chr1.1620' => 'acertr', 'Atru.chr9.899' => 'acertr', 'AUR62009033' => 'cqu', 'AUR62009034' => 'cqu', 'AUR62009035' => 'cqu', 'AUR62009036' => 'cqu', 'AUR62009037' => 'cqu', 'AUR62023268' => 'cqu', 'AUR62023269' => 'cqu', 'AUR62023270' => 'cqu', 'AUR62037636' => 'cqu', 'AUR62044232' => 'cqu', 'BcaB02g06708' => 'bca', 'BcaB02g06709' => 'bca', 'BcaB02g06711' => 'bca', 'BcaB03g13375' => 'bca', 'BcaB03g13376' => 'bca', 'BcaB03g13378' => 'bca', 'BcaB03g15082' => 'bca', 'BcaB03g15083' => 'bca', 'BcaB03g15227' => 'bca', 'BcaB04g17387' => 'bca', 'BcaB04g20779' => 'bca', 'BcaB05g24199' => 'bca', 'BcaB05g24813' => 'bca', 'BcaB06g27173' => 'bca', 'BcaB07g30095' => 'bca', 'BcaB07g30096' => 'bca', 'BcaB07g31247' => 'bca', 'BcaB07g31248' => 'bca', 'BcaB07g31249' => 'bca', 'BcaB07g31250' => 'bca', 'BcaB07g31251' => 'bca', 'BcaC01g03703' => 'bca', 'BcaC02g09632' => 'bca', 'BcaC03g14767' => 'bca', 'BcaC03g15461' => 'bca', 'BcaC03g17552' => 'bca', 'BcaC03g17563' => 'bca', 'BcaC04g22295' => 'bca', 'BcaC05g27556' => 'bca', 'BcaC06g30881' => 'bca', 'BcaC06g33672' => 'bca', 'BcaC06g33673' => 'bca', 'BcaC07g37108' => 'bca', 'BcaC08g46128' => 'bca', 'BcaC08g46796' => 'bca', 'BcaC08g46797' => 'bca', 'BcaC09g48785' => 'bca', 'BcaNung06190' => 'bca', 'BolC2t08349H' => 'bol', 'BolC2t09175H' => 'bol', 'BolC2t11579H' => 'bol', 'BolC2t11590H' => 'bol', 'BolC3t17237H' => 'bol', 'BolC4t26069H' => 'bol', 'BolC5t29344H' => 'bol', 'BolC5t29345H' => 'bol', 'BolC5t29346H' => 'bol', 'BolC5t32251H' => 'bol', 'BolC5t33476H' => 'bol', 'BolC6t39107H' => 'bol', 'BolC6t39827H' => 'bol', 'BolC7t44324H' => 'bol', 'BolC7t44325H' => 'bol', 'BolC7t44326H' => 'bol', 'BolC8t47128H' => 'bol', 'BolC8t47129H' => 'bol', 'BolC8t47276H' => 'bol', 'BolC9t53352H' => 'bol', 'BolC9t55001H' => 'bol', 'BraA01t03684Z' => 'bra', 'BraA01t03695Z' => 'bra', 'BraA02t06433Z' => 'bra', 'BraA02t06933Z' => 'bra', 'BraA02t07235Z' => 'bra', 'BraA02t08633Z' => 'bra', 'BraA02t08634Z' => 'bra', 'BraA02t08637Z' => 'bra', 'BraA03t13217Z' => 'bra', 'BraA05t20996Z' => 'bra', 'BraA05t21976Z' => 'bra', 'BraA06t23691Z' => 'bra', 'BraA06t23693Z' => 'bra', 'BraA06t26926Z' => 'bra', 'BraA06t26927Z' => 'bra', 'BraA07t30993Z' => 'bra', 'BraA07t31512Z' => 'bra', 'BraA08t32472Z' => 'bra', 'BraA08t35454Z' => 'bra', 'BraA08t35455Z' => 'bra', 'BraA09t37336Z' => 'bra', 'BraA09t37337Z' => 'bra', 'C02p22130' => 'bna', 'C02p31420' => 'bna', 'C02p35850' => 'bna', 'C02p55310' => 'bna', 'C04p44890' => 'bna', 'C05p05750' => 'bna', 'C05p05760' => 'bna', 'C05p05770' => 'bna', 'C05p35400' => 'bna', 'C06p47920' => 'bna', 'C07p38030' => 'bna', 'C07p38040' => 'bna', 'C08p03320' => 'bna', 'C08p03330' => 'bna', 'C08p04770' => 'bna', 'C09p04210' => 'bna', 'C09p21030' => 'bna', 'CAN.G1129.10' => 'can', 'CAN.G423.16' => 'can', 'CAN.G610.26' => 'can', 'CAN.G625.48' => 'can', 'CAN.G625.49' => 'can', 'CAN.G625.50' => 'can', 'CAN.G82.18' => 'can', 'CAN.G82.23' => 'can', 'CANSAT78G1714' => 'cansat', 'CANSAT80G1394' => 'cansat', 'CARHR007560' => 'chi', 'CARHR007570' => 'chi', 'CARHR038680' => 'chi', 'CARHR058970' => 'chi', 'CARHR066850' => 'chi', 'CARHR066860' => 'chi', 'CARHR093640' => 'chi', 'CARHR152310' => 'chi', 'CARHR154590' => 'chi', 'CARHR182440' => 'chi', 'CARHR214490' => 'chi', 'CARHR214500' => 'chi', 'CARHR214570' => 'chi', 'CARHR214580' => 'chi', 'Carub.0001s0711' => 'cru', 'Carub.0001s0712' => 'cru', 'Carub.0002s1305' => 'cru', 'Carub.0002s2053' => 'cru', 'Carub.0003s1805' => 'cru', 'Carub.0005s0784' => 'cru', 'Carub.0005s0785' => 'cru', 'Carub.0005s1254' => 'cru', 'Carub.0005s1255' => 'cru', 'Carub.0005s1256' => 'cru', 'Carub.0005s2416' => 'cru', 'Carub.0007s2999' => 'cru', 'Carub.0007s3508' => 'cru', 'Ca_25473_v3' => 'car', 'Ca_29865_v3' => 'car', 'Cc04_g06890' => 'ccan', 'Cc04_g06900' => 'ccan', 'Cc07_g08550' => 'ccan', 'Cc07_g08560' => 'ccan', 'Cc07_g08570' => 'ccan', 'Cc11_g09700' => 'ccan', 'CDE04G2344' => 'cde', 'CDE06G1829' => 'cde', 'Cfa007894' => 'cfa', 'Cfa007895' => 'cfa', 'Cfa007896' => 'cfa', 'Cfa015840' => 'cfa', 'Ciclev10013181m.g' => 'ccl', 'Ciclev10013188m.g' => 'ccl', 'Ciclev10013191m.g' => 'ccl', 'Ciclev10017614m.g' => 'ccl', 'Ciclev10023053m.g' => 'ccl', 'CiPaw.03G064500' => 'cil', 'CiPaw.03G064600' => 'cil', 'CiPaw.05G241500' => 'cil', 'CiPaw.15G134900' => 'cil', 'CiPaw.16G088700' => 'cil', 'ClCG04G010940' => 'cla', 'ClCG07G016400' => 'cla', 'ClCG07G016410' => 'cla', 'COL.COLO4_09367' => 'col', 'COL.COLO4_09369' => 'col', 'COL.COLO4_20837' => 'col', 'Cpa.g.c43807' => 'cpa', 'Cpa.g.sc170.34' => 'cpa', 'Cpa.g.sc170.36' => 'cpa', 'Cpa.g.sc2639.1' => 'cpa', 'Cpa.g.sc2639.2' => 'cpa', 'Cpa.g.sc3971.1' => 'cpa', 'CsaV3_1G004000' => 'csa', 'CsaV3_1G046630' => 'csa', 'CsaV3_4G010420' => 'csa', 'CsaV3_4G010440' => 'csa', 'CsaV3_4G010450' => 'csa', 'CsaV3_4G010460' => 'csa', 'CsaV3_5G010030' => 'csa', 'CsaV3_5G010050' => 'csa', 'CsaV3_5G013540' => 'csa', 'CsaV3_5G013830' => 'csa', 'CsaV3_5G013890' => 'csa', 'CSS0004186' => 'camsi', 'CSS0014050' => 'camsi', 'CSS0015266' => 'camsi', 'CSS0015639' => 'camsi', 'CSS0020161' => 'camsi', 'CSS0029888' => 'camsi', 'CSS0032685' => 'camsi', 'CSS0041793' => 'camsi', 'CSS0046919' => 'camsi', 'CSS0047424' => 'camsi', 'DCAR_010417' => 'dca', 'DCAR_010702' => 'dca', 'DCAR_010703' => 'dca', 'DCAR_012804' => 'dca', 'DCAR_017178' => 'dca', 'DCAR_030179' => 'dca', 'DCAR_030813' => 'dca', 'Dinv33963' => 'din', 'Duzib093G1193' => 'dzi', 'Duzib133G1374' => 'dzi', 'Duzib138G0094' => 'dzi', 'Duzib138G0405' => 'dzi', 'Duzib138G0453' => 'dzi', 'Duzib138G1452' => 'dzi', 'Duzib251G0259' => 'dzi', 'ECA232G1876' => 'eca', 'ECA232G3653' => 'eca', 'ECA232G4724' => 'eca', 'ECA233G1030' => 'eca', 'ECA238G0180' => 'eca', 'ECA240G1386' => 'eca', 'ECA246G2068' => 'eca', 'ECA246G3196' => 'eca', 'EL10Ac2g03553' => 'bvu', 'EL10Ac2g04531' => 'bvu', 'EL10Ac2g04533' => 'bvu', 'EL10Ac2g04535' => 'bvu', 'Eucgr.B00824' => 'egr', 'Eucgr.B02852' => 'egr', 'Eucgr.F02788' => 'egr', 'Eucgr.F02789' => 'egr', 'Eucgr.J01517' => 'egr', 'Eucgr.K02234' => 'egr', 'FAN04G0387' => 'fan', 'FAN08G0472' => 'fan', 'FAN13G2698' => 'fan', 'FAN19G3113' => 'fan', 'FAN23G1130' => 'fan', 'FAN26G1445' => 'fan', 'FAN28G1043' => 'fan', 'FAN28G2288' => 'fan', 'FvH4_1g30410' => 'fve', 'Glyma.02G088900' => 'gma', 'Glyma.05G002200' => 'gma', 'Glyma.07G096700' => 'gma', 'Glyma.09G181100' => 'gma', 'Glyma.10G121000' => 'gma', 'Glyma.10G132500' => 'gma', 'Glyma.18G294200' => 'gma', 'Glyma.19G002300' => 'gma', 'Gohir.A03G181600' => 'ghi', 'Gohir.A03G181700' => 'ghi', 'Gohir.A05G271400' => 'ghi', 'Gohir.A07G174300' => 'ghi', 'Gohir.A09G049400' => 'ghi', 'Gohir.A09G181900' => 'ghi', 'Gohir.A09G182000' => 'ghi', 'Gohir.A09G182100' => 'ghi', 'Gohir.A09G182200' => 'ghi', 'Gohir.A09G182300' => 'ghi', 'Gohir.A12G054700' => 'ghi', 'Gohir.A12G054800' => 'ghi', 'Gohir.A12G267200' => 'ghi', 'Gohir.D02G203300' => 'ghi', 'Gohir.D02G203400' => 'ghi', 'Gohir.D05G273600' => 'ghi', 'Gohir.D07G181600' => 'ghi', 'Gohir.D09G050500' => 'ghi', 'Gohir.D09G176600' => 'ghi', 'Gohir.D09G176700' => 'ghi', 'Gohir.D09G176800' => 'ghi', 'Gohir.D09G176900' => 'ghi', 'Gohir.D12G053800' => 'ghi', 'Gohir.D12G053900' => 'ghi', 'Gohir.D12G054000' => 'ghi', 'Gohir.D12G054100' => 'ghi', 'Gohir.D12G054200' => 'ghi', 'Gohir.D12G267700' => 'ghi', 'Gorai.001G202600' => 'gra', 'Gorai.005G230400' => 'gra', 'Gorai.005G230500' => 'gra', 'Gorai.006G059100' => 'gra', 'Gorai.006G198700' => 'gra', 'Gorai.006G198800' => 'gra', 'Gorai.008G057100' => 'gra', 'Gorai.008G287700' => 'gra', 'Gorai.009G286700' => 'gra', 'GSVIVG01030982001' => 'vvi', 'GSVIVG01030985001' => 'vvi', 'HanXRQChr07g0193801' => 'han', 'HanXRQChr07g0193821' => 'han', 'HanXRQChr09g0249151' => 'han', 'HanXRQChr09g0249171' => 'han', 'HanXRQChr09g0249181' => 'han', 'HanXRQChr09g0249191' => 'han', 'HanXRQChr09g0262711' => 'han', 'HanXRQChr09g0262731' => 'han', 'HanXRQChr09g0262741' => 'han', 'HanXRQChr09g0262751' => 'han', 'HanXRQChr09g0262761' => 'han', 'HanXRQChr11g0325111' => 'han', 'HanXRQChr11g0325121' => 'han', 'HanXRQChr11g0325131' => 'han', 'HanXRQChr12g0375671' => 'han', 'HanXRQChr13g0422811' => 'han', 'HanXRQChr13g0422821' => 'han', 'HanXRQChr13g0422831' => 'han', 'HanXRQChr14g0440451' => 'han', 'HanXRQChr14g0450831' => 'han', 'HanXRQChr17g0535981' => 'han', 'HanXRQChr17g0552001' => 'han', 'HanXRQChr17g0559421' => 'han', 'HanXRQChr17g0560701' => 'han', 'Haze_00650' => 'cav', 'Haze_14183' => 'cav', 'Haze_16383' => 'cav', 'Hma1.2p1_0075F.1_g039330' => 'hma', 'Hma1.2p1_0266F.1_g106880' => 'hma', 'Hma1.2p1_0348F.1_g131930' => 'hma', 'Hma1.2p1_0500F.1_g167240' => 'hma', 'Hma1.2p1_0653F.1_g196040' => 'hma', 'Hma1.2p1_0976F.1_g243290' => 'hma', 'Hma1.2p1_1109F.1_g258245' => 'hma', 'Hma1.2p1_1283F.1_g272750' => 'hma', 'HPP92_011575' => 'vpl', 'Lalb_Chr00c03g0404221' => 'lal', 'Lalb_Chr00c03g0404271' => 'lal', 'Lalb_Chr04g0257621' => 'lal', 'Lalb_Chr06g0176721' => 'lal', 'Lalb_Chr10g0091421' => 'lal', 'Lalb_Chr10g0091431' => 'lal', 'Lalb_Chr10g0093851' => 'lal', 'Lalb_Chr14g0364861' => 'lal', 'Lalb_Chr14g0370991' => 'lal', 'Lalb_Chr22g0353181' => 'lal', 'Lj1g0016049' => 'lja', 'Lj2g0012594' => 'lja', 'Lj5g0000083' => 'lja', 'Lsat_1_v5_gn_2_81000' => 'lsa', 'Lsat_1_v5_gn_3_128320' => 'lsa', 'Lsat_1_v5_gn_3_128441' => 'lsa', 'Lsat_1_v5_gn_3_61681' => 'lsa', 'Lsat_1_v5_gn_3_80601' => 'lsa', 'Lsat_1_v5_gn_4_155700' => 'lsa', 'Lsat_1_v5_gn_4_155741' => 'lsa', 'Lsat_1_v5_gn_8_142881' => 'lsa', 'Lsat_1_v5_gn_8_142920' => 'lsa', 'Lsat_1_v5_gn_8_142961' => 'lsa', 'Lsat_1_v5_gn_8_143020' => 'lsa', 'Lsat_1_v5_gn_8_75780' => 'lsa', 'Manes.01G014800' => 'mes', 'Manes.01G112500' => 'mes', 'Manes.01G112600' => 'mes', 'Manes.01G112700' => 'mes', 'Manes.02G070800' => 'mes', 'Manes.02G070900' => 'mes', 'Manes.02G071000' => 'mes', 'Manes.05G132600' => 'mes', 'Manes.06G065151' => 'mes', 'Manes.14G106600' => 'mes', 'MBI07_g30209_MAGBIO' => 'mbi', 'MBI09_g25160_MAGBIO' => 'mbi', 'MBI09_g25161_MAGBIO' => 'mbi', 'MBI09_g25163_MAGBIO' => 'mbi', 'MBI16_g42426_MAGBIO' => 'mbi', 'MBI16_g44834_MAGBIO' => 'mbi', 'MD06G1219800' => 'mdo', 'MD09G1255700' => 'mdo', 'MD09G1255800' => 'mdo', 'MD13G1035400' => 'mdo', 'MD14G1229500' => 'mdo', 'MD15G1204900' => 'mdo', 'MD16G1037400' => 'mdo', 'MD17G1248900' => 'mdo', 'Medtr1g109650' => 'mtr', 'Medtr4g077720' => 'mtr', 'Medtr6g082480' => 'mtr', 'Medtr7g007440' => 'mtr', 'Medtr7g082590' => 'mtr', 'Medtr7g082640' => 'mtr', 'MELO3C010391.2' => 'cme', 'MELO3C010393.2' => 'cme', 'MELO3C021798.2' => 'cme', 'MELO3C034458.2' => 'cme', 'Migut.E00367' => 'egut', 'Migut.L00496' => 'egut', 'Migut.L00497' => 'egut', 'Migut.L00498' => 'egut', 'Migut.L01027' => 'egut', 'Migut.L01028' => 'egut', 'Migut.L01032' => 'egut', 'MSTRG.13552' => 'ama', 'MSTRG.2831' => 'ama', 'MSTRG.3543' => 'ama', 'Nitab4.5_0000625g0070' => 'nta', 'Nitab4.5_0000965g0060' => 'nta', 'Nitab4.5_0001194g0100' => 'nta', 'Nitab4.5_0003908g0010' => 'nta', 'Nitab4.5_0004136g0010' => 'nta', 'Nitab4.5_0004279g0030' => 'nta', 'Nitab4.5_0007294g0030' => 'nta', 'Nn4g23947' => 'nnu', 'Oeu012579.1' => 'oeu', 'Oeu022412.1' => 'oeu', 'Oeu039737.1' => 'oeu', 'Oeu039738.1' => 'oeu', 'Oeu054219.1' => 'oeu', 'Os01g0691100' => 'osa', 'Os01g0691300' => 'osa', 'Os03g0111300' => 'osa', 'Os05g0550300' => 'osa', 'Os05g0550600' => 'osa', 'Os06g0705400' => 'osa', 'Os10g0504650' => 'osa', 'Os10g0504900' => 'osa', 'Os10g0505000' => 'osa', 'Os10g0505500' => 'osa', 'Os10g0505700' => 'osa', 'Os11g0620300' => 'osa', 'Peaxi162Scf00104g01410' => 'pax', 'Peaxi162Scf00877g00009' => 'pax', 'PGR004G0990' => 'pgr', 'PGR042G0557' => 'pgr', 'PGR042G2741' => 'pgr', 'PGR044G1785' => 'pgr', 'PGSC0003DMG400005731' => 'stu', 'PGSC0003DMG400017132' => 'stu', 'PGSC0003DMG400017133' => 'stu', 'PGSC0003DMG400021761' => 'stu', 'PGSC0003DMG400021763' => 'stu', 'PGSC0003DMG400021773' => 'stu', 'PGSC0003DMG400026381' => 'stu', 'PGSC0003DMG400030587' => 'stu', 'Phvul.004G002600' => 'pvu', 'Phvul.004G002700' => 'pvu', 'Phvul.004G154200' => 'pvu', 'Phvul.007G031600' => 'pvu', 'Phvul.008G008200' => 'pvu', 'Potri.004G096000' => 'ptr', 'Potri.012G054300' => 'ptr', 'Potri.015G044500' => 'ptr', 'Potri.017G118700' => 'ptr', 'Prupe.1G316400' => 'ppe', 'Prupe.3G147800' => 'ppe', 'Prupe.3G147900' => 'ppe', 'Prupe.5G224300' => 'ppe', 'Psat0s2857g0040' => 'psa', 'Psat3g097600' => 'psa', 'Psat3g179520' => 'psa', 'PSO017G4805' => 'pso', 'PSO017G5239' => 'pso', 'QL01p010843' => 'qlo', 'QL02p049732' => 'qlo', 'QL02p050390' => 'qlo', 'QL02p050473' => 'qlo', 'QL04p011999' => 'qlo', 'QL10p026454' => 'qlo', 'RcHm_v2.0_Chr3g0490631' => 'rch', 'RcHm_v2.0_Chr7g0179461' => 'rch', 'RcHm_v2.0_Chr7g0179471' => 'rch', 'Rhsim08G0083600' => 'rsi', 'Rhsim08G0083800' => 'rsi', 'Rhsim08G0130800' => 'rsi', 'Rhsim09G0104000' => 'rsi', 'Rhsim10G0070000' => 'rsi', 'Rhsim10G0070600' => 'rsi', 'Rhsim10G0070700' => 'rsi', 'Rhsim10G0070900' => 'rsi', 'Rhsim10G0071000' => 'rsi', 'Rhsim10G0071100' => 'rsi', 'Rhsim10G0071200' => 'rsi', 'Rhsim10G0071300' => 'rsi', 'Rhsim10G0072000' => 'rsi', 'Rhsim10G0072100' => 'rsi', 'Rhsim10G0072200' => 'rsi', 'Rhsim10G0072300' => 'rsi', 'Rhsim10G0072400' => 'rsi', 'Rhsim12G0142000' => 'rsi', 'Rhsim12G0142200' => 'rsi', 'Rhsim12G0142300' => 'rsi', 'Rhsim12G0142400' => 'rsi', 'RhsimUnG0075700' => 'rsi', 'RhsimUnG0075800' => 'rsi', 'RhsimUnG0075900' => 'rsi', 'RhsimUnG0076000' => 'rsi', 'RhsimUnG0076100' => 'rsi', 'RhsimUnG0245900' => 'rsi', 'RhsimUnG0246000' => 'rsi', 'Sabra04G0065200' => 'sbr', 'Sabra12G0038100' => 'sbr', 'Sabra15G0040600' => 'sbr', 'SalBow5G2482' => 'sbo', 'SalBow5G2639' => 'sbo', 'SalBow5G2647' => 'sbo', 'SalBow5G5360' => 'sbo', 'SalBow5G5476' => 'sbo', 'SalBow8G1049' => 'sbo', 'SalBow8G2447' => 'sbo', 'Sc10g0001070' => 'sci', 'Sc10g0009400' => 'sci', 'Sc11g0008470' => 'sci', 'Sed0007464' => 'sed', 'Sed0010035' => 'sed', 'Sed0011150' => 'sed', 'Sed0012370' => 'sed', 'Sed0012778' => 'sed', 'Sed0014311' => 'sed', 'Sed0014794' => 'sed', 'Sed0015843' => 'sed', 'Sed0022507' => 'sed', 'Sed0023450' => 'sed', 'SGA_v2.0_scaffold38G14999' => 'sas', 'Solyc03g034330.1' => 'sly', 'Solyc03g034334.1' => 'sly', 'Solyc03g034336.1' => 'sly', 'Solyc03g034338.1' => 'sly', 'Solyc03g034380.1' => 'sly', 'Solyc03g034390.1' => 'sly', 'Solyc03g119210.1' => 'sly', 'Solyc05g008895.1' => 'sly', 'Solyc06g069070.1' => 'sly', 'Sopen02g030990' => 'spe', 'Sopen03g007110' => 'spe', 'Sopen03g007130' => 'spe', 'Sopen03g007140' => 'spe', 'Sopen03g007150' => 'spe', 'Sopen03g007160' => 'spe', 'Sopen03g007170' => 'spe', 'Sopen03g007180' => 'spe', 'Sopen03g007190' => 'spe', 'Sopen03g007210' => 'spe', 'Sopen03g007230' => 'spe', 'Sopen03g038090' => 'spe', 'Sopen05g004650' => 'spe', 'Sopen06g026350' => 'spe', 'Sp1g35670' => 'spa', 'Sp2g17750' => 'spa', 'Sp3g16400' => 'spa', 'Sp4g02860' => 'spa', 'Sp5g05290' => 'spa', 'Sp5g21840' => 'spa', 'Sp7g03900' => 'spa', 'TAR371G0380' => 'tar', 'TAR426G0003' => 'tar', 'THA.LOC104805584' => 'tha', 'THA.LOC104805585' => 'tha', 'THA.LOC104805971' => 'tha', 'THA.LOC104805972' => 'tha', 'THA.LOC104809836' => 'tha', 'THA.LOC104821163' => 'tha', 'THA.LOC109116626' => 'tha', 'Thecc.02G222600' => 'tca', 'Thecc.03G040600' => 'tca', 'Thecc.04G129100' => 'tca', 'Thhalv10005361m.g' => 'esa', 'Thhalv10005391m.g' => 'esa', 'Thhalv10005534m.g' => 'esa', 'Thhalv10006394m.g' => 'esa', 'Thhalv10009184m.g' => 'esa', 'Thhalv10009190m.g' => 'esa', 'Thhalv10010852m.g' => 'esa', 'Thhalv10011892m.g' => 'esa', 'Thhalv10019361m.g' => 'esa', 'Thhalv10019362m.g' => 'esa', 'Thhalv10019407m.g' => 'esa', 'Thhalv10021828m.g' => 'esa', 'Thhalv10028000m.g' => 'esa', 'Thhalv10028094m.g' => 'esa', 'Thhalv10028232m.g' => 'esa', 'Thhalv10028346m.g' => 'esa', 'Thhalv10029435m.g' => 'esa', 'TPR.G16555' => 'tpr', 'TPR.G19304' => 'tpr', 'TPR.G25251' => 'tpr', 'TPR.G29481' => 'tpr', 'TPR.G39930' => 'tpr', 'TWI15G1023' => 'twi', 'TWI53G0446' => 'twi', 'TWI63G0290' => 'twi', 'TWI74G0057' => 'twi', 'TWI74G0776' => 'twi', 'TWI77G0259' => 'twi', 'TWI81G0906' => 'twi', 'unitig_26.g10253' => 'ugi', 'unitig_8.g3249' => 'ugi', 'VMungo0720G2231' => 'vmu', 'VMungo1383G2077' => 'vmu', 'Zm00001eb000850' => 'zma', 'Zm00001eb112570' => 'zma', 'Zm00001eb198770' => 'zma', 'Zm00001eb220740' => 'zma', 'Zm00001eb272750' => 'zma', 'Zm00001eb283440' => 'zma', 'Zm00001eb294870' => 'zma', 'Zm00001eb294880' => 'zma', 'Zm00001eb360660' => 'zma' ) $gf_id = 'HOM05D000889' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000889' ) $data_identifier = 'HOM05D000889' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 7, 'ach' => (int) 1, 'amhyb' => (int) 5, 'aly' => (int) 13, 'aox' => (int) 2, 'arhy' => (int) 2, 'ath' => (int) 16, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 10, 'bca' => (int) 38, 'bol' => (int) 21, 'bra' => (int) 22, 'can' => (int) 8, 'cansat' => (int) 2, 'chi' => (int) 14, 'cru' => (int) 13, 'car' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 1, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 8, 'fve' => (int) 1, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 9, 'vvi' => (int) 2, 'han' => (int) 24, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 1, 'lal' => (int) 10, 'lja' => (int) 3, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 6, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 7, 'nnu' => (int) 1, 'oeu' => (int) 5, 'osa' => (int) 12, 'pax' => (int) 2, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 2, 'qlo' => (int) 6, 'rch' => (int) 3, 'rsi' => (int) 28, 'sbr' => (int) 3, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 10, 'sas' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 14, 'spa' => (int) 7, 'tar' => (int) 2, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 17, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 2, 'vmu' => (int) 2, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360660' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1